PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang08g05990.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 259aa    MW: 29753.5 Da    PI: 5.0207
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang08g05990.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.45.4e-21100150155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+++GVr+++ +grW+AeIrd + +   rkr++lg+f+taeeAa  +++a+ +++g
  Vang08g05990.1 100 SKFRGVRQRP-WGRWAAEIRDpF-Q---RKRVWLGTFDTAEEAAMVYDRAAISFRG 150
                     79********.**********55.3...5**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.2E-14100150IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-21100157IPR016177DNA-binding domain
CDDcd000181.28E-34100156No hitNo description
SMARTSM003802.2E-36101164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-28101157IPR001471AP2/ERF domain
PROSITE profilePS5103223.024101158IPR001471AP2/ERF domain
PRINTSPR003679.5E-11102113IPR001471AP2/ERF domain
PRINTSPR003679.5E-11124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEEHQEKTIV TKFVKSKFFF PKVIRISATD QNATDSSSEE DDEERNLHRV KKVVSEIRIV  60
HANRTKGHNK NINNNTDCCC CSAKYNKTME QHYQREKSES KFRGVRQRPW GRWAAEIRDP  120
FQRKRVWLGT FDTAEEAAMV YDRAAISFRG VDAVTNLIKP PLKECESVVK PKSCCACASP  180
TSVLLFQPWM EPLCLEETFK EEVFDGLNYE VDSLLFSDHA LCEQPLPTTL SNVDVSLDED  240
LESCKWDVDS FFSDEAFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-20102163362ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-20102163665ATERF1
3gcc_A3e-20102163665ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014515477.11e-165PREDICTED: ethylene-responsive transcription factor CRF4-like
TrEMBLA0A0S3SVQ60.0A0A0S3SVQ6_PHAAN; Uncharacterized protein
STRINGGLYMA03G23330.21e-102(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.16e-36cytokinin response factor 4